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Genoscope

Publications 2014

Publié le 12 avril 2017

  
A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp
Ahmed S, Cock JM, Pessia E, Luthringer R, Cormier A, Robuchon M, Sterck L, Peters AF, Dittami SM, Corre E, Valero M, Aury JM, Roze D, Van de Peer Y, Bothwell J, Marais GAB and Coelho SM
Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data
Alberti A, Belser C, Engelen S, Bertrand L, Orvain C, Brinas L, Cruaud C, Giraut L, Da Silva C, Firmo C, Aury JM and Wincker P
Enterotypes of the human gut microbiome (vol 473, pg 174, 2011)
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poulain J, Qin JJ, Sicheritz-Ponten T, Tims S, Torrents D, Ugarte E, Zoetendal EG, Wang J, Guarner F, Pedersen O, de Vos WM, Brunak S, Dore J, Weissenbach J, Ehrlich SD, Bork P and Meta HITC
Revealing the hidden functional diversity of an enzyme family
Bastard K, Smith AAT, Vergne-Vaxelaire C, Perret A, Zaparucha A, De Melo-Minardi R, Mariage A, Boutard M, Debard A, Lechaplais C, Pelle C, Pellouin V, Perchat N, Petit JL, Kreimeyer A, Medigue C, Weissenbach J, Artiguenave F, De Berardinis V, Vallenet D and Salanoubat M
Synthesis of Mono- and Dihydroxylated Amino Acids with New alpha-Ketoglutarate-Dependent Dioxygenases: Biocatalytic Oxidation of C-H Bonds
Baud D, Saaidi PL, Monfleur A, Harari M, Cuccaro J, Fossey A, Besnard M, Debard A, Mariage A, Pellouin V, Petit JL, Salanoubat M, Weissenbach J, de Berardinis V and Zaparucha A
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, Noel B, Bento P, Da Silva C, Labadie K, Alberti A, Aury JM, Louis A, Dehais P, Bardou P, Montfort J, Klopp C, Cabau C, Gaspin C, Thorgaard GH, Boussaha M, Quillet E, Guyomard R, Galiana D, Bobe J, Volff JN, Genet C, Wincker P, Jaillon O, Crollius HR and Guiguen Y
Characterization of a P1-Like Bacteriophage Carrying an SHV-2 Extended-Spectrum beta-Lactamase from an Escherichia coli Strain
Billard-Pomares T, Fouteau S, Jacquet ME, Roche D, Barbe V, Castellanos M, Bouet JY, Cruveiller S, Medigue C, Blanco J, Clermont O, Denamur E and Branger C
Large alpha-aminonitrilase activity screening of nitrilase superfamily members: Access to conversion and enantiospecificity by LC-MS
Bordier F, Stam M, Darii E, Tricot S, Fossey A, Rohault J, Debard A, Mariage A, Pellouin V, Petit JL, Perret A, Vallenet D, Salanoubat M, Weissenbach J, Vergne-Vaxelaire C, de Berardinis V and Zaparucha A
Bacterial structure and spatiotemporal distribution in a horizontal subsurface flow constructed wetland
Bouali M, Zrafi I, Bakhrouf A, Chaussonnerie S and Sghir A
Functional diversity of carbohydrate-active enzymes enabling a bacterium to ferment plant biomass
Boutard M, Cerisy T, Nogue P-Y, Alberti A, Weissenbach J, Salanoubat M and Tolonen AC
A multilocus phylogeny for worldwide Cantharellus (Cantharellales, Agaricomycetidae)
Buyck B, Kauff F, Eyssartier G, Couloux A and Hofstetter V
Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria
Calteau A, Fewer DP, Latifi A, Coursin T, Laurent T, Jokela J, Kerfeld CA, Sivonen K, Piel J and Gugger M
Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
Chalhoub B, Denoeud F, Liu SY, Parkin IAP, Tang HB, Wang XY, Chiquet J, Belcram H, Tong CB, Samans B, Correa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao MX, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan GY, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VHD, Chalabi S, Hu Q, Fan CC, Tollenaere R, Lu YH, Battail C, Shen JX, Sidebottom CHD, Wang XF, Canaguier A, Chauveau A, Berard A, Deniot G, Guan M, Liu ZS, Sun FM, Lim YP, Lyons E, Town CD, Bancroft I, Wang XW, Meng JL, Ma JX, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou YM, Hua W, Sharpe AG, Paterson AH, Guan CY and Wincker P
Paralogous metabolism: S-alkyl-cysteine degradation in Bacillus subtilis
Chan CM, Danchin A, Marliere P and Sekowska A
Characterization of Novel Polycyclic Aromatic Hydrocarbon Dioxygenases from the Bacterial Metagenomic DNA of a Contaminated Soil
Chemerys A, Pelletier E, Cruaud C, Martin F, Violet F and Jouanneau Y
Functional Annotation of Cotesia congregata Bracovirus: Identification of Viral Genes Expressed in Parasitized Host Immune Tissues
Chevignon G, Theze J, Cambier S, Poulain J, Da Silva C, Bezier A, Musset K, Moreau SJM, Drezen J-M and Huguet E
Structural and functional partitioning of bread wheat chromosome 3B
Choulet F, Alberti A, Theil S, Glover N, Barbe V, Daron J, Pingault L, Sourdille P, Couloux A, Paux E, Leroy P, Mangenot S, Guilhot N, Le Gouis J, Balfourier F, Alaux M, Jamilloux V, Poulain J, Durand C, Bellec A, Gaspin C, Safar J, Dolezel J, Rogers J, Vandepoele K, Aury J-M, Mayer K, Berges H, Quesneville H, Wincker P and Feuillet C
Unveiling of the Diversity of Prasinoviruses (Phycodnaviridae) in Marine Samples by Using High-Throughput Sequencing Analyses of PCR-Amplified DNA Polymerase and Major Capsid Protein Genes
Clerissi C, Grimsley N, Ogata H, Hingamp P, Poulain J and Desdevises Y
Identification of the main venom protein components of Aphidius ervi, a parasitoid wasp of the aphid model Acyrthosiphon pisum
Colinet D, Anselme C, Deleury E, Mancini D, Poulain J, Azema-Dossat C, Belghazi M, Tares S, Pennacchio F, Poirie M and Gatti JL
Mapping the Epigenetic Basis of Complex Traits
Cortijo S, Wardenaar R, Colome-Tatche M, Gilly A, Etcheverry M, Labadie K, Caillieux E, Hospital F, Aury JM, Wincker P, Roudier F, Jansen RC, Colot V and Johannes F
Organization and evolution of transposable elements along the bread wheat chromosome 3B
Daron J, Glover N, Pingault L, Theil S, Jamilloux V, Paux E, Barbe V, Mangenot S, Alberti A, Wincker P, Quesneville H, Feuillet C and Choulet F
RNA Sequencing and Proteogenomics Reveal the Importance of Leaderless mRNAs in the Radiation-Tolerant Bacterium Deinococcus deserti
de Groot A, Roche D, Fernandez B, Ludanyi M, Cruveiller S, Pignol D, Vallenet D, Armengaud J and Blanchard L
Synthesis of new biocarrier-nucleotide systems for cellular delivery in bacterial auxotrophic strains
De S, Groaz E, Maiti M, Pezo V, Marliere P and Herdewijn P
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng CF, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joet T, Labadie K, Lan TY, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Munoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P and Lashermes P
Molecular and morphological systematics of the sandfly Sergentomyia (Sintonius) clydei Sinton, 1928 and questions about its record in the Seychelles
Depaquit J, Randrianambinintsoa FJ, Jaouadi K, Payard J, Bounamous A, Augot D, Krueger A, Brengues C, Couloux A, Robert V and Leger N
KIF1C mutations in two families with hereditary spastic paraparesis and cerebellar dysfunction
Dor T, Cinnamon Y, Raymond L, Shaag A, Bouslam N, Bouhouche A, Gaussen M, Meyer V, Durr A, Brice A, Benomar A, Stevanin G, Schuelke M and Edvardson S
Extensive Transcription Analysis of the Hyposoter didymator Ichnovirus Genome in Permissive and Non-Permissive Lepidopteran Host Species
Doremus T, Cousserans F, Gyapay G, Jouan V, Milano P, Wajnberg E, Darboux I, Consoli FL and Volkoff AN
Venom gland extract is not required for successful parasitism in the polydnavirus-associated endoparasitoid Hyposoter didymator (Hym. Ichneumonidae) despite the presence of numerous novel and conserved venom proteins (vol 43, pg 292, 2013)
Doremus T, Urbach S, Jouan V, Cousserans F, Ravallec M, Demettre E, Wajnberg E, Poulain J, Azema-Dossat C, Darboux I, Escoubas JM, Colinet D, Gatti JL, Poirie M and Volkoff AN
Phylogeny and taxonomy of Syngonanthus and Comanthera (Eriocaulaceae): Evidence from expanded sampling
Echternacht L, Sano PT, Bonilla C, Cruaud C, Couloux A and Dubuisson JY
Insights on the Evolution of Plant Succulence from a Remarkable Radiation in Madagascar (Euphorbia)
Evans M, Aubriot X, Hearn D, Lanciaux M, Lavergne S, Cruaud C, Lowry PP and Haevermans T
Validation of RetroPath, a computer-aided design tool for metabolic pathway engineering
Feher T, Planson AG, Carbonell P, Fernandez-Castane A, Grigoras I, Dariy E, Perret A and Faulon JL
The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome
Formey D, Sallet E, Lelandais-Briere C, Ben C, Bustos-Sanmamed P, Niebel A, Frugier F, Combier JP, Debelle F, Hartmann C, Poulain J, Gavory F, Wincker P, Roux C, Gentzbittel L, Gouzy J and Crespi M
Population genomics supports baculoviruses as vectors of horizontal transfer of insect transposons
Gilbert C, Chateigner A, Ernenwein L, Barbe V, Bezier A, Herniou EA and Cordaux R
TE-Tracker: systematic identification of transposition events through whole-genome resequencing
Gilly A, Etcheverry M, Madoui MA, Guy J, Quadrana L, Alberti A, Martin A, Heitkam T, Engelen S, Labadie K, Le Pen J, Wincker P, Colot V and Aury JM
Mechanisms of endoderm formation in a cartilaginous fish reveal ancestral and homoplastic traits in jawed vertebrates
Godard BG, Coolen M, Le Panse S, Gombault A, Ferreiro-Galve S, Laguerre L, Lagadec R, Wincker P, Poulain J, Da Silva C, Kuraku S, Carre W, Boutet A and Mazan S
Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease
Gomez-Valero L, Rusniok C, Rolando M, Neou M, Dervins-Ravault D, Demirtas J, Rouy Z, Moore RJ, Chen HL, Petty NK, Jarraud S, Etienne J, Steinert M, Heuner K, Gribaldo S, Medigue C, Glockner G, Hartland EL and Buchrieser C
Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens
Grandaubert J, Lowe RGT, Soyer JL, Schoch CL, de Wouw APV, Fudal I, Robbertse B, Lapalu N, Links MG, Ollivier B, Linglin J, Barbe V, Mangenot S, Cruaud C, Borhan H, Howlett BJ, Balesdent MH and Rouxel T
Maintaining Two Mating Types: Structure of the Mating Type Locus and Its Role in Heterokaryosis in Podospora anserina
Grognet P, Bidard F, Kuchly C, Tong LCH, Coppin E, Benkhali JA, Couloux A, Wincker P, Debuchy R and Silar P
The phylogeography of Eurasian Fraxinus species reveals ancient transcontinental reticulation
Hinsinger DD, Gaudeul M, Couloux A, Bousquet J and Frascaria-Lacoste N
Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus
Humily F, Farrant GK, Marie D, Partensky F, Mazard S, Perennou M, Labadie K, Aury JM, Wincker P, Segui AN, Scanlan DJ and Garczarek L
Draft Genome Sequence of Propane- and Butane-Oxidizing Actinobacterium Rhodococcus ruber IEGM 231
Ivshina IB, Kuyukina MS, Krivoruchko AV, Barbe V and Fischer C
Forest refugia and riverine barriers promote diversification in the West African pygmy shrew (Crocidura obscurior complex, Soricomorpha)
Jacquet F, Nicolas V, Colyn M, Kadjo B, Hutterer R, Decher J, Akpatou B, Cruaud C and Denys C
Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp QH-2 strain
Ji BY, Zhang SD, Arnoux P, Rouy Z, Alberto F, Philippe N, Murat D, Zhang WJ, Rioux JB, Ginet N, Sabaty M, Mangenot S, Pradel N, Tian JS, Yang J, Zhang LC, Zhang WY, Pan HM, Henrissat B, Coutinho PM, Li Y, Xiao T, Medigue C, Barbe V, Pignol D, Talla E and Wu LF
Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation
Koch H, Galushko A, Albertsen M, Schintlmeister A, Gruber-Dorninger C, Lucker S, Pelletier E, Le Paslier D, Spieck E, Richter A, Nielsen PH, Wagner M and Daims H
The complete genome of Blastobotrys (Arxula) adeninivorans LS3-a yeast of biotechnological interest
Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Boer E, Gabaldon T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Haehnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U and Neuveglise C
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Goker M, Parker CT, Amann R, Beck BJ, Chain PSG, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, Detter JC, De Vos P, Donohue TJ, Dong XZ, Ehrlich DS, Fraser C, Gibbs R, Gilbert J, Gilna P, Glockner FO, Jansson JK, Keasling JD, Knight R, Labeda D, Lapidus A, Lee JS, Li WJ, Ma JC, Markowitz V, Moore ERB, Morrison M, Meyer F, Nelson KE, Ohkuma M, Ouzounis CA, Pace N, Parkhill J, Qin N, Rossello-Mora R, Sikorski J, Smith D, Sogin M, Stevens R, Stingl U, Suzuki K, Taylor D, Tiedje JM, Tindall B, Wagner M, Weinstock G, Weissenbach J, White O, Wang J, Zhang LX, Zhou YG, Field D, Whitman WB, Garrity GM and Klenk HP
Establishment and analysis of a reference transcriptome for Spodoptera frugiperda
Legeai F, Gimenez S, Duvic B, Escoubas JM, Grenet ASG, Blanc F, Cousserans F, Seninet I, Bretaudeau A, Mutuel D, Girard PA, Monsempes C, Magdelenat G, Hilliou F, Feyereisen R, Ogliastro M, Volkoff AN, Jacquin-Joly E, d'Alencon E, Negre N and Fournier P
Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology
Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Coute Y, Rivkina E, Abergel C and Claverie JM
Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor
Lery LMS, Frangeul L, Tomas A, Passet V, Almeida AS, Bialek-Davenet S, Barbe V, Bengoechea JA, Sansonetti P, Brisse S and Tournebize R
The Conserved nhaAR Operon Is Drastically Divergent between B2 and Non-B2 Escherichia coli and Is Involved in Extra-Intestinal Virulence
Lescat M, Reibel F, Pintard C, Dion S, Glodt J, Gateau C, Launay A, Ledda A, Cruvellier S, Tourret J and Tenaillon O
An integrated catalog of reference genes in the human gut microbiome
Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, Arumugam M, Kultima JR, Prifti E, Nielsen T, Juncker AS, Manichanh C, Chen B, Zhang W, Levenez F, Wang J, Xu X, Xiao L, Liang S, Zhang D, Zhang Z, Chen W, Zhao H, Al-Aama JY, Edris S, Yang H, Wang J, Hansen T, Nielsen HB, Brunak S, Kristiansen K, Guarner F, Pedersen O, Dore J, Ehrlich SD, Bork P, Wang J and Meta HITC
Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose
Limam RD, Chouari R, Mazeas L, Wu T-D, Li T, Grossin-Debattista J, Guerquin-Kern J-L, Saidi M, Landoulsi A, Sghir A and Bouchez T
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
Liu SY, Liu YM, Yang XH, Tong CB, Edwards D, Parkin IAP, Zhao MX, Ma JX, Yu JY, Huang SM, Wang XY, Wang JY, Lu K, Fang ZY, Bancroft I, Yang TJ, Hu Q, Wang XF, Yue Z, Li HJ, Yang LF, Wu J, Zhou Q, Wang WX, King GJ, Pires JC, Lu CX, Wu ZY, Sampath P, Wang Z, Guo H, Pan SK, Yang LM, Min JM, Zhang D, Jin DC, Li WS, Belcram H, Tu JX, Guan M, Qi CK, Du DZ, Li JN, Jiang LC, Batley J, Sharpe AG, Park BS, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong CH, Wang L, Li JP, Hu ZY, Zhuang M, Huang JY, Shi JQ, Mei DS, Liu J, Lee TH, Wang JP, Jin HZ, Li ZY, Li X, Zhang JF, Xiao L, Zhou YM, Liu ZS, Liu XQ, Qin R, Tang X, Liu WB, Wang YP, Zhang YY, Lee J, Kim HH, Denoeud F, Xu X, Liang XM, Hua W, Wang XW, Wang J, Chalhoub B and Paterson AH
Patterns of Rare and Abundant Marine Microbial Eukaryotes
Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra W, Mahe F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C and Massana R
Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, Karsenti E, Bork P and Acinas SG
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
Mayer KFX, Rogers J, Dolezel J, Pozniak C, Eversole K, Feuillet C, Gill B, Friebe B, Lukaszewski AJ, Sourdille P, Endo TR, Kubalakova M, Cihalikova J, Dubska Z, Vrana J, Sperkova R, Simkova H, Febrer M, Clissold L, McLay K, Singh K, Chhuneja P, Singh NK, Khurana J, Akhunov E, Choulet F, Alberti A, Barbe V, Wincker P, Kanamori H, Kobayashi F, Itoh T, Matsumoto T, Sakai H, Tanaka T, Wu JZ, Ogihara Y, Handa H, Maclachlan PR, Sharpe A, Klassen D, Edwards D, Batley J, Olsen OA, Sandve SR, Lien S, Steuernagel B, Wulff B, Caccamo M, Ayling S, Ramirez-Gonzalez RH, Clavijo BJ, Wright J, Pfeifer M, Spannagl M, Martis MM, Mascher M, Chapman J, Poland JA, Scholz U, Barry K, Waugh R, Rokhsar DS, Muehlbauer GJ, Stein N, Gundlach H, Zytnicki M, Jamilloux V, Quesneville H, Wicker T, Faccioli P, Colaiacovo M, Stanca AM, Budak H, Cattivelli L, Glover N, Pingault L, Paux E, Sharma S, Appels R, Bellgard M, Chapman B, Nussbaumer T, Bader KC, Rimbert H, Wang SC, Knox R, Kilian A, Alaux M, Alfama F, Couderc L, Guilhot N, Viseux C, Loaec M, Keller B, Praud S and Iwgsc
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto J-M, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Dore J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Leonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sorensen S, Tap J, Tims S, Ussery DW, Yamada T, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD and Meta HITC
Attenuated Virulence and Genomic Reductive Evolution in the Entomopathogenic Bacterial Symbiont Species, Xenorhabdus poinarii
Ogier J-C, Pages S, Bisch G, Chiapello H, Medigue C, Rouy Z, Teyssier C, Vincent S, Tailliez P, Givaudan A and Gaudriault S
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
Parkin IAP, Koh C, Tang HB, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires JC, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang XY, Paterson AH, King G, Bancroft I, Chalhoub B and Sharpe AG
Evolution within the nuthatches (Sittidae: Aves, Passeriformes): molecular phylogeny, biogeography, and ecological perspectives
Pasquet E, Barker FK, Martens J, Tillier A, Cruaud C and Cibois A
Probing Ambiguous Base-Pairs by Genetic Transformation with XNA Templates
Pezo V, Schepers G, Lambertucci C, Marliere P and Herdewijn P
The Spatiotemporal Program of DNA Replication Is Associated with Specific Combinations of Chromatin Marks in Human Cells
Picard F, Cadoret JC, Audit B, Arneodo A, Alberti A, Battail C, Duret L and Prioleau MN
Complete genome sequence of invertebrate iridovirus IIV30 isolated from the corn earworm, Helicoverpa zea
Piegu B, Guizard S, Spears T, Cruaud C, Couloux A, Bideshi DK, Federici BA and Bigot Y
Journal of Invertebrate Pathology 116 (), 43-47, 2014
Complete genome sequence of invertebrate iridovirus IIV-25 isolated from a blackfly larva
Piegu B, Guizard S, Spears T, Cruaud C, Couloux A, Bideshi DK, Federici BA and Bigot Y
Complete genome sequence of invertebrate iridovirus IIV22A, a variant of IIV22, isolated originally from a blackfly larva
Piegu B, Guizard S, Tan YP, Cruaud C, Couloux A, Bideshi DK, Federici BA and Bigot Y
Genome sequence of a crustacean iridovirus, IIV31, isolated from the pill bug, Armadillidium vulgare
Piegu B, Guizard S, Yeping T, Cruaud C, Asgari S, Bideshi DK, Federici BA and Bigot Y
Epistasis and Allele Specificity in the Emergence of a Stable Polymorphism in Escherichia coli
Plucain J, Hindre T, Le Gac M, Tenaillon O, Cruveiller S, Medigue C, Leiby N, Harcombe WR, Marx CJ, Lenski RE and Schneider D
The Streamlined Genome of Phytomonas spp. Relative to Human Pathogenic Kinetoplastids Reveals a Parasite Tailored for Plants
Porcel BM, Denoeud F, Opperdoes F, Noel B, Madoui MA, Hammarton TC, Field MC, Da Silva C, Couloux A, Poulain J, Katinka M, Jabbari K, Aury JM, Campbell DA, Cintron R, Dickens NJ, Docampo R, Sturm NR, Koumandou VL, Fabre S, Flegontov P, Lukes J, Michaeli S, Mottram JC, Szoor B, Zilberstein D, Bringaud F, Wincker P and Dollet M
Large Chromosomal Rearrangements during a Long-Term Evolution Experiment with Escherichia coli
Raeside C, Gaffe J, Deatherage DE, Tenaillon O, Briska AM, Ptashkin RN, Cruveiller S, Medigue C, Lenski RE, Barrick JE and Schneider D
Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms
Ramos PIP, Picao RC, de Almeida LGP, Lima NCB, Girardello R, Vivan ACP, Xavier DE, Barcellos FG, Pelisson M, Vespero EC, Medigue C, de Vasconcelos ATR, Gales AC and Nicolas MF
Broadening the scope of Baeyer-Villiger monooxygenase activities toward alpha,beta-unsaturated ketones: a promising route to chiral enol-lactones and ene-lactones
Reignier T, de Berardinis V, Petit JL, Mariage A, Hamze K, Duquesne K and Alphand V
Transient Hypermutagenesis Accelerates the Evolution of Legume Endosymbionts following Horizontal Gene Transfer
Remigi P, Capela D, Clerissi C, Tasse L, Torchet R, Bouchez O, Batut J, Cruveiller S, Rocha EPC and Masson-Boivin C
Assessing the quality of modelled 3D protein structures using the ModFOLD server
Roche DB, Buenavista MT and McGuffin LJ
A Phylogenetic Re-Analysis of Groupers with Applications for Ciguatera Fish Poisoning
Schoelinck C, Hinsinger DD, Dettai A, Cruaud C and Justine JL
Stereochemistry and Conformation of Skyllamycin, a Non-Ribosomally Synthesized Peptide from Streptomyces sp Acta 2897
Schubert V, Di Meo F, Saaidi PL, Bartoschek S, Fiedler HP, Trouillas P and Sussmuth RD
Genome-defence small RNAs exapted for epigenetic mating-type inheritance
Singh DP, Saudemont B, Guglielmi G, Arnaiz O, Gout JF, Prajer M, Potekhin A, Przybos E, Aubusson-Fleury A, Bhullar S, Bouhouche K, Lhuillier-Akakpo M, Tanty V, Blugeon C, Alberti A, Labadie K, Aury JM, Sperling L, Duharcourt S and Meyer E
Profiling the orphan enzymes
Sorokina M, Stam M, Medigue C, Lespinet O and Vallenet D
Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach
Stuani L, Lechaplais C, Salminen AV, Segurens B, Durot M, Castelli V, Pinet A, Labadie K, Cruveiller S, Weissenbach J, de Berardinis V, Salanoubat M and Perret A
Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection
Talhinhas P, Azinheira HG, Vieira B, Loureiro A, Tavares S, Batista D, Morin E, Petitot AS, Paulo OS, Poulain J, Da Silva C, Duplessis S, Silva MD and Fernandez D
Insights into the pathways of iron- and sulfur-oxidation, and biofilm formation from the chemolithotrophic acidophile Acidithiobacillus ferrivorans CF27
Talla E, Hedrich S, Mangenot S, Ji B, Johnson DB, Barbe V and Bonnefoy V
Haploinsufficiency of Dmxl2, Encoding a Synaptic Protein, Causes Infertility Associated with a Loss of GnRH Neurons in Mouse
Tata B, Huijbregts L, Jacquier S, Csaba Z, Genin E, Meyer V, Leka S, Dupont J, Charles P, Chevenne D, Carel JC, Leger J and de Roux N
Quantitative proteomics using reductive dimethylation for stable isotope labeling
Tolonen AC and Haas W
Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style?
Trujillo ME, Bacigalupe R, Pujic P, Igarashi Y, Benito P, Riesco R, Medigue C and Normand P
Fuse or die: how to survive the loss of Dam in Vibrio cholerae
Val ME, Kennedy SP, Soler-Bistue AJ, Barbe V, Bouchier C, Ducos-Galand M, Skovgaard O and Mazel D
Recognition of a new species of Kallymenia (Gigartinales, Rhodophyta) from Croatia (Mediterranean Sea) based on morphology and DNA barcode
Verges A, Gey D, Utge J, Cruaud C and Le Gall L
The distribution of the Malay civet Viverra tangalunga (Carnivora: Viverridae) across Southeast Asia: natural or human-mediated dispersal?
Veron G, Willsch M, Dacosta V, Patou ML, Seymour A, Bonillo C, Couloux A, Te Wong S, Jennings AP, Fickel J and Wilting A
Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis
Watanabe J, Hattori M, Berriman M, Lehane MJ, Hall N, Solano P, Aksoy S, Hide W, Toure Y, Attardo GM, Darby AC, Toyoda A, Hertz-Fowler C, Larkin DM, Cotton JA, Sanders MJ, Swain MT, Quail MA, Inoue N, Ravel S, Taylor TD, Srivastava TP, Sharma V, Warren W, Wilson RK, Suzuki Y, Lawson D, Hughes DST, Megy K, Masiga DK, Mireji PO, Hansen IA, Van den Abbeele J, Benoit JB, Bourtzis K, Obiero GFO, Robertson HM, Jones JW, Zhou JJ, Field LM, Friedrich M, Nyanjom SRG, Telleria EL, Caljon G, Ribeiro JMC, Acosta-Serrano A, Ooi CP, Rose C, Price DP, Haines LR, Christoffels A, Sim C, Pham DQD, Denlinger DL, Geiser DL, Omedo IA, Winzerling JJ, Peyton JT, Marucha KK, Jonas M, Meuti ME, Rawlings ND, Zhang QR, Macharia RW, Michalkova V, Dashti ZJS, Baumann AA, Gade G, Marco HG, Caers J, Schoofs L, Riehle MA, Hu WQ, Tu ZJ, Tarone AM, Malacrida AR, Kibet CK, Scolari F, Koekemoer JJO, Willis J, Gomulski LM, Falchetto M, Scott MJ, Fu SH, Sze SH, Luiz T, Weiss B, Walshe DP, Wang JW, Wamalwa M, Mwangi S, Ramphul UN, Snyder AK, Brelsfoard CL, Thomas GH, Tsiamis G, Arensburger P, Rio RVM, Macdonald SJ, Panji S, Kruger A, Benkahla A, Balyeidhusa ASP, Msangi A, Okoro CK, Stephens D, Stanley EJ, Mpondo F, Wamwiri F, Mramba F, Siwo G, Githinji G, Harkins G, Murilla G, Lehvaslaiho H, Malele I, Auma JE, Kinyua JK, Ouma J, Okedi L, Manga L, Aslett M, Koffi M, Gaunt MW, Makgamathe M, Mulder N, Manangwa O, Abila PP, Wincker P, Gregory R, Bateta R, Sakate R, Ommeh S, Lehane S, Imanishi T, Osamor VC, Kawahara Y and Iggi
Fifty thousand years of Arctic vegetation and megafaunal diet
Willerslev E, Davison J, Moora M, Zobel M, Coissac E, Edwards ME, Lorenzen ED, Vestergard M, Gussarova G, Haile J, Craine J, Gielly L, Boessenkool S, Epp LS, Pearman PB, Cheddadi R, Murray D, Brathen KA, Yoccoz N, Binney H, Cruaud C, Wincker P, Goslar T, Alsos IG, Bellemain E, Brysting AK, Elven R, Sonstebo JH, Murton J, Sher A, Rasmussen M, Ronn R, Mourier T, Cooper A, Austin J, Moller P, Froese D, Zazula G, Pompanon F, Rioux D, Niderkorn V, Tikhonov A, Savvinov G, Roberts RG, MacPhee RDE, Gilbert MTP, Kjaer KH, Orlando L, Brochmann C and Taberlet P
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, Cattonaro F, Del Fabbro C, Pinosio S, Zuccolo A, Chapman J, Grimwood J, Tadeo FR, Estornell LH, Munoz-Sanz JV, Ibanez V, Herrero-Ortega A, Aleza P, Perez-Perez J, Ramon D, Brunel D, Luro F, Chen CX, Farmerie WG, Desany B, Kodira C, Mohiuddin M, Harkins T, Fredrikson K, Burns P, Lomsadze A, Borodovsky M, Reforgiato G, Freitas-Astua J, Quetier F, Navarro L, Roose M, Wincker P, Schmutz J, Morgante M, Machado MA, Talon M, Jaillon O, Ollitrault P, Gmitter F and Rokhsar D
Genome Sequence of Luminous Piezophile Photobacterium phosphoreum ANT-2200
Zhang S-D, Barbe V, Garel M, Zhang W-J, Chen H, Santini C-L, Murat D, Jing H, Zhao Y, Lajus A, Martini S, Pradel N, Tamburini C and Wu L-F