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Genoscope

Publications 2017

Published on 13 April 2017

  
Microbial communities in pyrene amended soil-compost mixture and fertilized soil
Adam IKU, Duarte M, Pathmanathan J, Miltner A, Bruls T and Kastner M
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, Guy J, Haquelle M, Jacoby E, Jaillon O, Lemainque A, Pelletier E, Samson G, Wessner M, Acinas SG, Royo-Llonch M, Cornejo-Castillo FM, Logares R, Fernandez-Gomez B, Bowler C, Cochrane G, Amid C, Ten Hoopen P, De Vargas C, Grimsley N, Desgranges E, Kandels-Lewis S, Ogata H, Poulton N, Sieracki ME, Stepanauskas R, Sullivan MB, Brum JR, Duhaime MB, Poulos BT, Hurwitz BL, Pesant S, Karsenti E, Wincker P, Genoscope Tech T and Tara Oceans C
Molecular phylogenetics of Sarcolaenaceae (Malvales), Madagascar's largest endemic plant family (vol 182, pg 729, 2016)
Aubriot X, Soulebeau A, Haevermans T, Schatz GE, Cruaud C and Lowry PP
Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis
Bastard K, Perret A, Mariage A, Bessonnet T, Pinet-Turpault A, Petit JL, Darii E, Bazire P, Vergne-Vaxelaire C, Brewee C, Debard A, Pellouin V, Besnard-Gonnet M, Artiguenave F, Medigue C, Vallenet D, Danchin A, Zaparucha A, Weissenbach J, Salanoubat M and De Berardinis V
Biocatalytic Approaches towards the Synthesis of Chiral Amino Alcohols from Lysine: Cascade Reactions Combining alpha-Keto Acid Oxygenase Hydroxylation with Pyridoxal Phosphate- Dependent Decarboxylation
Baud D, Peruch O, Saaidi PL, Fossey A, Mariage A, Petit JL, Salanoubat M, Vergne-Vaxelaire C, de Berardinis V and Zaparucha A
Biogeography and diversity of Collodaria (Radiolaria) in the global ocean
Biard T, Bigeard E, Audic S, Poulain J, Gutierrez-Rodriguez A, Pesant S, Stemmann L and Not F
Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria
Blanchard L, Guerin P, Roche D, Cruveiller S, Pignol D, Vallenet D, Armengaud J and de Groot A
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
Blanc-Mathieu R, Perfus-Barbeoch L, Aury JM, Da Rocha M, Gouzy J, Sallet E, Martin-Jimenez C, Bailly-Bechet M, Castagnone-Sereno P, Flot JF, Kozlowski DK, Cazareth J, Couloux A, Da Silva C, Guy J, Kim-Jo YJ, Rancurel C, Schiex T, Abad P, Wincker P and Danchin EGJ
A Synthetic Alternative to Canonical One-Carbon Metabolism
Bouzon M, Perret A, Loreau O, Delmas V, Perchat N, Weissenbach J, Taran F and Marliere P
Untangling species identity in gastropods with polymorphic shells in the genus Bolma Risso, 1826 (Mollusca, Vetigastropoda)
Castelin M, Williams ST, Buge B, Maestrati P, Lambourdiere J, Ozawa T, Utge J, Couloux A, Alf A and Samadi S
Evolution of a Biomass-Fermenting Bacterium To Resist Lignin Phenolics
Cerisy T, Souterre T, Torres-Romero I, Boutard M, Dubois I, Patrouix J, Labadie K, Berrabah W, Salanoubat M, Doring V and Tolonen AC
Eukaryotic molecular diversity at different steps of the wastewater treatment plant process reveals more phylogenetic novel lineages
Chouari R, Leonard M, Bouali M, Guermazi S, Rahli N, Zrafi I, Morin L and Sghir A
Flipping chromosomes in deep-sea archaea
Cossu M, Badel C, Catchpole R, Gadelle D, Marguet E, Barbe V, Forterre P and Oberto J
Meaning and consequence of the coexistence of competitive hydrogen bond/salt forms on the dissociation orientation of non-covalent complexes
Darii E, Alves S, Gimbert Y, Perret A and Tabet JC
Expanding the reaction space of aldolases using hydroxypyruvate as a nucleophilic substrate
de Berardinis V, Guerard-Helaine C, Darii E, Bastard K, Helaine V, Mariage A, Petit JL, Poupard N, Sanchez-Moreno I, Stam M, Gefflaut T, Salanoubat M and Lemaire M
Structural Alteration of OmpR as a Source of Ertapenem Resistance in a CTX-M-15-Producing Escherichia coli O25b:H4 Sequence Type 131 Clinical Isolate
Dupont H, Choinier P, Roche D, Adiba S, Sookdeb M, Branger C, Denamur E and Mammeri H
An unusual strategy for the anoxic biodegradation of phthalate
Ebenau-Jehle C, Mergelsberg M, Fischer S, Bruls T, Jehmlich N, von Bergen M and Boll M
Base-Modified Nucleic Acids as a Powerful Tool for Synthetic Biology and Biotechnology
Eremeeva E, Abramov M, Margamuljana L and Herdewijn P
The 5-chlorouracil:7-deazaadenine base pair as an alternative to the dT:dA base pair
Eremeeva E, Abramov M, Marliere P and Herdewijn P
Genetic Architecture of a Rice Nested Association Mapping Population
Fragoso CA, Moreno M, Wang ZH, Heffelfinger C, Arbelaez LJ, Aguirre JA, Franco N, Romero LE, Labadie K, Zhao HY, Dellaporta SL and Lorieux M
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat
Galia W, Leriche F, Cruveiller S, Garnier C, Navratil V, Dubost A, Blanquet-Diot S and Thevenot-Sergentet D
Stereoselective synthesis of gamma-hydroxy-alpha-amino acids through aldolase-transaminase recycling cascades
Guerard-Helaine C, Heuson E, Ndiaye M, Gourbeyre L, Lemaire M, Helaine V, Charmantray F, Petit JL, Salanoubat M, de Berardinis V and Gefflaut T
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J and Aury JM
The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria
Ji BY, Zhang SD, Zhang WJ, Rouy Z, Alberto F, Santini CL, Mangenot S, Gagnot S, Philippe N, Pradel N, Zhang LC, Tempel S, Li Y, Medigue C, Henrissat B, Coutinho PM, Barbe V, Talla E and Wu LF
Extensive recent secondary contacts between four European white oak species
Leroy T, Roux C, Villate L, Bodenes C, Romiguier J, Paiva JAP, Dossat C, Aury JM, Plomion C and Kremer A
One-pot, two-step cascade synthesis of naturally rare L-erythro (3S,4S) ketoses by coupling a thermostable transaminase and transketolase
Lorilliere M, De Sousa M, Bruna F, Heuson E, Gefflaut T, de Berardinis V, Saravanan T, Yi D, Fessner WD, Charmantray F and Hecquet L
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells
Mangot JF, Logares R, Sanchez P, Latorre F, Seeleuthner Y, Mondy S, Sieracki ME, Jaillon O, Wincker P, de Vargas C and Massana R
Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime
Marchetti M, Clerissi C, Yousfi Y, Gris C, Bouchez O, Rocha E, Cruveiller S, Jauneau A, Capela D and Masson-Boivin C
Evolution of the banana genome (Musa acuminata) is impacted by large chromosomal translocations
Martin G, Carreel F, Coriton O, Hervouet C, Cardi C, Derouault P, Roques D, Salmon F, Rouard M, Sardos J, Labadie K, Baurens F-C and D'Hont A
Impact of biotic and abiotic factors on the expression of fungal effector-encoding genes in axenic growth conditions
Meyer M, Bourras S, Gervais J, Labadie K, Cruaud C, Balesdent MH and Rouxel T
De Novo Assemblies of Three Oryza glaberrima Accessions Provide First Insights about Pan-Genome of African Rices
Monat C, Pera B, Ndjiondjop MN, Sow M, Tranchant-Dubreuil C, Bastianelli L, Ghesquiere A and Sabot F
An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence
Mouammine A, Pages S, Lanois A, Gaudriault S, Jubelin G, Bonabaud M, Cruveiller S, Dubois E, Roche D, Legrand L, Brillard J and Givaudan A
Phylogeny and diversification of the cloud forest Morpho sulkowskyi group (Lepidoptera, Nymphalidae) in the evolving Andes
Nattier R, Capdevielle-Dulac C, Cassilde C, Couloux A, Cruaud C, Lachaume G, Lamas G, Silvain JF and Blandin P
Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains
Pancrace C, Barny MA, Ueoka R, Calteau A, Scalvenzi T, Pedron J, Barbe V, Piel J, Humbert JF and Gugger M
Rearranged Biosynthetic Gene Cluster and Synthesis of Hassallidin E in Planktothrix serta PCC 8927
Pancrace C, Jokela J, Sassoon N, Ganneau C, Desnos-Ollivier M, Wahlsten M, Hurnisto A, Calteau A, Bay S, Fewer DP, Sivonen K and Gugger M
Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families
Popovic A, Hai T, Tchigvintsev A, Hajighasemi M, Nocek B, Khusnutdinova AN, Brown G, Glinos J, Flick R, Skarina T, Chernikova TN, Yim V, Bruls T, Le Paslier D, Yakimov MM, Joachimiak A, Ferrer M, Golyshina OV, Savchenko A, Golyshin PN and Yakunin AF
A spectral algorithm for fast de novo layout of uncorrected long nanopore reads
Recanati A, Bruls T and d'Aspremont A
Construction and characterization of a BAC library for functional genomics in Xenopus tropicalis
Spirhanzlova P, Dhorne-Pollet S, Fellah JS, Da Silva C, Tlapakova T, Labadie K, Weissenbach J, Poulain J, Jaffredo T, Wincker P, Krylov V and Pollet N
The metagenomic data life-cycle: standards and best practices
ten Hoopen P, Finn RD, Bongo LA, Corre E, Fosso B, Meyer F, Mitchell A, Pelletier E, Pesole G, Santamaria M, Willassen NP and Cochrane G
Comparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the Chimeric Nature of the Iron-Oxidizing Acidithiobacilli Genomes
Tran TTT, Mangenot S, Magdelenat G, Payen E, Rouy Z, Belahbib H, Grail BM, Johnson DB, Bonnefoy V and Talla E
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes
Vallenet D, Calteau A, Cruveiller S, Gachet M, Lajus A, Josso A, Mercier J, Renaux A, Rollin J, Rouy Z, Roche D, Scarpelli C and Medigue C